Biomedical Engineering Laboratory(Matsuda Laboratory), Division of Systems Informatics, Department of Systems Science, Graduate School of Informatics, Kyoto University

2015

Journal

Y. Miyake, S. Ishikawa, Y. Kimura, A. Son, H. Imai, T. Matsuda, H. Yamada, A. Toshimitsu, T. Kondo, ''Pharmacokinetics of chiral dendrimer-triamine-coordinated Gd-MRI contrast agents evaluated by in vivo MRI and estimated by in vitro QCM'', Sensors 15(12), 31973-31986, Dec 2015.

S. Toyoda, N. Shiraki, S. Yamada, C. Uwabe, H. Imai, T. Matsuda, A. Yoneyama, T. Takeda, T. Takakuwa, ''Morphogenesis of the inner ear at different stages of normal human development'', Anat. Rec. 298(12), 2081-2090, Dec 2015.

S. Toyoda, N. Shiraki, S. Yamada, C. Uwabe, H. Imai, T. Matsuda, A. Yoneyama, T. Takeda, T. Takakuwa, ''3D models related to the publication: Morphogenesis of the inner ear at different stages of normal human development'', MorphoMuseuM 1(3)-e6, Nov 2015.

H. Yamada, Y. Hasegawa, Y. Suzuki, H. Imai, T. Matsuda, Y. Kimura, A. Toshimitsu, Y. Aoyama,  T. Kondo, ''Magnetic resonance imaging of tumor with a self-traceable polymer conjugated with an antibody fragment'', Bioorg. Med. Chem. Lett. 25(13), 2675-2678, Jul 2015.

H. Kobayashi, Y. Matsuda, T. Hitomi, H. Okuda, H. Shioi, T. Matsuda, H. Imai, M. Sone, D. Taura, K.H. Harada, T. Habu, Y. Takagi, S. Miyamoto, A. Koizumi, ''Biochemical and functional characterization of RNF213 (Mysterin) R4810K, a susceptibility mutation of moyamoya disease, in angiogenesis in vitro and in vivo'', J. Am. Heart Assoc. 4(7), e002146, Jun 2015.

Y. Miyake, Y. Kimura, O. Naomi, H. Imai, T. Matsuda, A. Toshimitsu, T. Kondo, ''Synthesis and functional evaluation of chiral dendrimer-triamine-coordinated Gd complexes with polyaminoalcohol end groups as highly sensitive MRI contrast agents'', Tetrahedron 71(26-27), 4438-4444, Feb 2015.

H. Yamada, Y. Hasegawa, H. Imai, Y. Takayama, F. Sugihara, T. Matsuda, H. Tochio, M. Shirakawa, S. Sando, Y. Kimura, A. Toshimitsu, Y. Aoyama, T. Kondo, ''Magnetic resonance imaging of tumor with a self-traceable phosphorylcholine polymer'', J. Am. Chem. Soc. 137(2), 799-806, Jan 2015.

Takeda Y, Shimayoshi T, Holz GG, Noma A, Modeling analysis of inositol 1,4,5-trisphosphate receptor-mediated Ca2+ mobilization under the control of glucagon-like peptide-1 in mouse pancreatic β-cells. American journal of physiology. Cell physiology ajpcell.00234.2015 2015年.

Takao Shimayoshi, Chae Young Cha, Akira Amano, Quantitative decomposition of dynamics of mathematical cell models: Method and application to ventricular myocyte models PLOS ONE 10(6) e0124970 2015.

Hasegawa Y, Shimayoshi T, Amano A, Matsuda T, Application of the Kalman Filter for Faster Strong Coupling of Cardiovascular Simulations. IEEE journal of biomedical and health informatics 2015.

M. Nakao, M. Hosokawa, Y. Imai, N. Ueda, T. Hatanaka, T. Kirita and T. Matsuda, "Volumetric Fibular Transfer Planning with Shape-Based Indicators in Mandibular Reconstruction", IEEE Journal of Biomedical and Health Informatics, Vol. 19, No.2, pp.581-589, Mar 2015.

H. Yamada, T. Kameda, Y. Kimura, H. Imai, T. Matsuda, S. Sando, A. Toshimitsu, Y. Aoyama, T. Kondo, "13C/15N‐Enriched l‐Dopa as a Triple‐Resonance NMR Probe to Monitor Neurotransmitter Dopamine in the Brain and Liver Extracts of Mice" ChemistryOpen, published online: 30 DEC 2015, DOI: 10.1002/open.201500196

H. Matsumoto, S. Ushimaru, T. Matsuda, T. Shimada, M. Mikuri, H. Takahashi, N. Takahashi, T. Kawada, T. Yamazaki. "Is Caffeine Abstention Necessary Before Adenosine-Induced Fractional Flow Reserve Measurement?" J Am Coll Cardiol. 2015;66(17):1943-1945, Oct 2015.

A. Kawamoto, T. Kato, T. Shioi, J. Okuda, T. Kawashima, Y. Tamaki, S. Niizuma, Y. Tanada, G. Takemura, M. Narazaki, T. Matsuda, T. Kimura. "Measurement of Technetium-99m Sestamibi Signals in Rats Administered a Mitochondrial Uncoupler and in a Rat Model of Heart Failure" PLoS ONE, 2015; 10(1): e0117091. Jan 2015

Conference

H. Imai, K. Sano, S. Momma, T. Tanaka, T. Matsuda, ''Imaging of tumor glycolysis with 2D heteronuclear multiple quantum coherence: Accelerated acquisitions using compressed sensing'', International Society for Magnetic Resonance in Medicine 23rd Annual Meeting, p4721, June 2015.

Takao Shimayoshi, Yuki Hasegawa, and Tetsuya Matsuda, Influence of cellular level transmural heterogeneity on left ventricular energetic efficiency: A theoretical study Cardiac Physiome Workshop 2015.

Yohei Suzuki, Takeru Arita, Shigeru Komiyama, Punzalan Florencio Rusty, CellCompiler: Multiscale biological function model simulator which can use complex calculation schemes Takao Shimayoshi, Yoshitoshi Kunieda, Akira Amano 第92回日本生理学会大会 2015年3月21日

A. Saito, M. Nakao, Y. Uranishi and T. Matsuda, "Deformation Estimation of Elastic Bodies Using Multiple Silhouette Images for Endoscopic Image Augmentation", IEEE International Symposium on Mixed and Augmented Reality(ISMAR), pp. 170-171, Sep 2015.

M. Nakao, S. Endo, K. Imanishi and T. Matsuda, "Endoscopic Image Augmentation Reflecting Shape Changes in Cutting Procedures", IEEE International Symposium on Mixed and Augmented Reality(ISMAR), pp. 176-177, Sep 2015.

S. Aso, M. Nakao, K. Imanishi, Y. Imai, N. Ueda, T. Hatanaka, T. Kirita and T. Matsuda, "A Study on Semi-automatic Fibular Transfer Planning in Mandibular Reconstruction",Proc. Medical and Biological Imaging, p6, Mar 2015.

R. Sakata, M. Nakao, and T. Matsuda, "Estimation of External Forces Using Local Displacement of Elastic Body", Proc. Medical and Biological Imaging, p10, Mar 2015.

M. Nakao, K. Taura and T. Matsuda, "Resection Process Modeling Based on 3D Images", Proc. Medical and Biological Imaging, p11, Mar 2015.

2014

Journal

Y. Kimura, T. Kurimoto, Y. Imai, H. Sugii, A. Toshimitsu, T. Matsuda, H. Imai, H. Yamada, T. Kondo, ''Novel biocompatible cobalt oxide nanoparticles for use in dual photoacoustic and magnetic resonance imaging'', JSM Biotechnol. Bioeng. 2(2), 1043, Nov 2014.

M. Nakao, S. Takemoto, T. Sugiura, K. Sawada, R. Kawakami, T. Nemoto and T. Matsuda, "Interactive Visual Exploration of Overlapping Similar Structures for Three-dimensional Microscope Images", BMC Bioinformatics, 15:415, Dec 2014.

M. Nakao, K. Kurebayashi, T. Sugiura, T. Sato, K. Sawada, R. Kawakami, T. Nemoto, K. Minato and T. Matsuda, "Visualizing in vivo Brain Neural Structures Using Volume Rendered Feature Spaces", Compters in Biology and Medicine, Vol. 53, pp. 85-93, Oct 2014. (Honored paper)

R. Haraguchi, M. Nakao, K. Kurosaki, M. Iwata, K. Nakazawa, K. Kagisaki and I. Shiraishi, "Heart Modeling of Congenital Heart Disease Based on Neonatal Echocardiographic Images", Advanced Medical Engineering, Vol. 3, pp.86-93, July 2014.

M. Nakao, Y. Oda, K. Taura, and K. Minato, "Direct Volume Manipulation for Visualizing Intraoperative Liver Resection Process", Computer Methods and Programs in Biomedicine, Vol. 113, No. 3, pp. 725-735, Mar 2014.

Conference

H. Imai, Y. Takayama, T. Matsuda, ''Time course study on glucose metabolism in mice by spectroscopic imaging with 2D heteronuclear multiple quantum coherence'', Joint Annual Meeting ISMRM-ESMRMB, p2918, May 2014.

Shimayoshi T, Mishima M, Amano A, Matsuda T, Nonlinear multiscale circulation model reproducable linear end-systolic pressure-volume relationship, Proceedings of Annual International Conference of the IEEE Engineering in Medicine and Biology Society. pp.6778 -6781 2014.

2013

Hidenari Matsumoto, Tetsuya Matsuda, Kenichi Miyamoto, Kenji Nakatsuma, Masataka Sugahara, Toshihiko Shimada. Feasibility of free-breathing late gadolinium-enhanced cardiovascular MRI for assessment of myocardial infarction: Navigator-gated versus single-shot imaging. International Journal of Cardiology, Vol. 168, No.1, 2013, pp. 94-99

Junji Okuda, Shinnichiro Niizuma, Tetsuo Shioi, Takao Kato, Yasutaka Inuzuka, Tsuneaki Kawashima, Yodo Tamaki, Akira Kawamoto, Yohei Tanada, Yoshitaka Iwanaga, Michiko Narazaki, Tetsuya Matsuda, Souichi Adachi, Tomoyoshi Soga, Genzou Takemura, Hiroshi Kondoh, Toru Kita, Takeshi Kimura, Persistent Overexpression of Phosphoglycerate Mutase, a Glycolytic Enzyme, Modifies Energy Metabolism and Reduces Stress Resistance of Heart in Mice, PLoS ONE 8(8), August 12, 2013.

K. Matsuo, R. Kamada, K. Mizusawa, H. Imai, Y. Takayama, M. Narazaki, T. Matsuda, Y. Takaoka, I. Hamachi, ''Specific detection and imaging of enzyme activity by signal-amplifiable self-assembling 19F MRI probes'', Chem. Eur. J. Vol. 19, pp. 12875-12883, 2013.

Takao Shimayoshi, Yuki Hasegawa, Mitsuharu Mishima, Tetsuya Matsuda. Theoretical analysis on the relationship between left ventricular energetic efficiency and acute infarct size. IET Systems Biology, 7(3), pp.74-78, 2013.

M. Nakao, M. Hosokawa, Y. Imai, N. Ueda, T. Hatanaka, K. Minato, T. Kirita, T. Matsuda, "Volumetric Surgical Planning System for Fibular Transfer in Mandibular Reconstruction", Proc. IEEE EMBC, pp. 3367-3370, 2013.

F. Ohno, M. Nakao, T. Matsuda, "Finger Force and Position Measurement without Obstructing Touch Interaction", IEEE EMBC Poster, 2013.

S. Takemoto, M. Nakao, T. Sato, T. Sugiura, K. Minato, T. Matsuda, "Interactive Volume Visualization of Microscopic Images Using Feature Space Reduction", IEEE EMBC Poster, 2013.

S. Endo, M. Nakao, K. Imanishi, M. Yoshida, M. Kioka, K. Minato, T. Matsuda, "Intraoperative Image Generation Methods Reflecting Shape Changes in Bone Cutting Procedures", IEEE EMBC Poster, 2013

Yuki Hasegawa, Mitsuharu Mishima, Takao Shimayoshi, Akira Amano, Tetsuya Matsuda. A study on the relationship between electrical transmural heterogeneity and ventricular energetics. 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp.6854-6857, 2013.

Florencio Rusty Punzalan, Yoshiharu Yamashita, Masanari Kawabata, Takao Shimayoshi, Hiroaki Kuwabara, Yoshitoshi Kunieda, Akira Amano. Code generator for distributed parameter biological model simulation with pde numerical schemes. 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp.1494-1497, 2013.

Takao Shimayoshi, Akira Amano, Tetsuya Matsuda. Theoretical Analysis on Cardiac Energetic Efficiency using a Simple Multiscale Model. Cardiac Physiome Workshop 2013, 2013.

Y. Kimura, H. Sugii, T. Matsuda, H. Imai, Y. Tabata, A. Toshimitsu, T. Kondo, ''Synthesis and functional evaluation of size-controlled manganese oxide nanoparticles for dual photoacoustic and magnetic resonance imaging'', The 6th annual meeting of the World Molecular Imaging Congress, p459, Sep 2013.

Y. Miyake, Y. Kimura, T. Matsuda, H. Imai, T. Yano, A. Toshimitsu, T. Kondo, ''Synthesis and functional evaluation of novel dendrimer-triamine-coordinated Gd-MRI contrast agent with aminoalcohol end groups'', The 6th annual meeting of the World Molecular Imaging Congress, p301, Sep 2013.

H. Imai, Y. Takayama, T. Matsuda, ''Spectroscopic Imaging of Metabolites with 2D Heteronuclear Multiple Quantum Coherence in Mouse'', International Society for Magnetic Resonance in Medicine 21st Annual Meeting & Exhibition, p1962, Apr 2013.

2012

Michihiro Ogawa, Hiromasa Kataoka, Satoshi Nitahara, Hiroyuki Fujimoto, Hiroyuki Aoki, Shinzaburo Ito, Michiko Narazaki, and Tetsuya Matsuda. Water-soluble Fluorinated Polymer Nanoparticle as 19F-MRI Contrast Agent Prepared by Living Random Copolymerization from Dendrimer Initiator. Bulletin of the Chemical Society of Japan, Vol. 85 (2012) No. 1, pp 79-86

Yuka Miyake, Yu Kimura, Syungo Ishikawa, Hiroshi Tsujita, Hiroki Miura, Michiko Narazaki, Tetsuya Matsuda, Yasuhiko Tabata, Tetsuya Yano, Akio Toshimitsu, Teruyuki Kondo. Synthesis and functional evaluation of chiral dendrimer–triamine-coordinated Gd complexes as highly sensitive MRI contrast agents. Tetrahedron Letters, Vol. 53, No. 34, 2012, pp. 4580–4583

Yu Kimura, Ryota Kamisugi, Michiko Narazaki, Tetsuya Matsuda, Yasuhiko Tabata, Akio Toshimitsu, Teruyuki Kondo. Size-Controlled and Biocompatible Gd2O3 Nanoparticles for Dual Photoacoustic and MR Imaging. Advanced Healthcare Materials, Vol. 1, No.5, 2012, pp. 657-660

Yuki Hasegawa, Takao Shimayoshi, Akira Amano, Tetsuya Matsuda, "A Coupling Method for a Cardiovascular Simulation Model which includes the Kalman Filter", In Proceedings of 34th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 1222-1225, Aug 2012.

M. Nakao, K. Maeda, R. Haraguchi, K. Kurosaki, K. Kagisaki, I. Shiraishi, K. Nakazawa, K. Minato, "Cardiovascular Modeling of Congenital Heart Disease Based on Neonatal Echocardiographic Images," IEEE Trans. on Information Technology in Biomedicine, Vol.16, No.1, pp. 70-79, Jan. 2012

M. Nakao, K. Imanishi, M. Kioka, M. Yoshida, K. Minato and T. Matsuda, "Synchronized Visualization of Bone Cutting to Support Microendoscopic Discectomy", 19th International Display Workshop, INP6-4L, Dec 2012.

2011

Hidenari Matsumoto, Tetsuya Matsuda, Kenichi Miyamoto, Toshihiko Shimada, Mikiko Mikuri, and Yuji Hiraoka, Peri-Infarct Zone on Early Contrast-Enhanced CMR Imaging in Patients With Acute Myocardial Infarction. J. Am. Coll. Cardiol. Img., Vol. 4, No. 6, 2011, pp. 610-61

Yousuke Takaoka, Keishi Kiminami, Keigo Mizusawa, Kazuya Matsuo, Michiko Narazaki, Tetsuya Matsuda, and Itaru Hamachi. Systematic Study of Protein Detection Mechanism of Self-assembling 19F NMR/MRI Nanoprobes toward Rational Design and Improved Sensitivity. Journal of the American Chemical Society, Vol. 133, No. 30, 2011, pp. 11725-11731

Yedi Sun, Yousuke Takaoka, Shinya Tsukiji, Michiko Narazaki, Tetsuya Matsuda, Itaru Hamachi. Construction of a 19F-lectin biosensor for glycoprotein imaging by using affinity-guided DMAP chemistry. Bioorganic & Medicinal Chemistry Letters, Vol. 21, No.15. pp4393-4396

Koya Yamaguchi, Ryosuke Ueki, Hiroshi Nonaka, Fuminori Sugihara, Tetsuya Matsuda, Masahiro Shirakawa, and Shinsuke Sando. Design of Chemical Shift-Switching 19F MRI Probe for the Specific Detection of Human Monoamine Oxidase A. Journal of the American Chemical Society, Vol. 133, No. 36, 2011, pp14208-14211

Tsuneaki Kawashima, Yasutaka Inuzuka, Junji Okuda, Takao Kato, Shinichiro Niizuma, Yodo Tamaki, Yoshitaka Iwanaga, Akira Kawamoto, Michiko Narazaki, Tetsuya Matsuda, Souichi Adachi, Genzou Takemura, Toru Kita, Takeshi Kimura, Tetsuo Shioi. Constitutive SIRT1 overexpression impairs mitochondria and reduces cardiac function in mice. Journal of Molecular and Cellular Cardiology, Vol. 51, No. 6, 2011, pp. 1026–1036

Tomohiro Doura, Qi An, Fuminori Sugihara, Tetsuya Matsuda, Shinsuke Sando. p-Aminophenyl Alkyl Ether-based 19F MRI Probe for Specific Detection and Imaging of Hypochlorite Ion. Chemistry Letters, Vol. 40, No. 12, 2011, pp. 1357-1359

K. W. C. Hung, M. Nakao, K. Yoshimura and K. Minato, "Background-incorporated Volumetric Model for Patient-Specific Surgical Simulation: A Segmentation-free, Modeling-free Framework", International Journal of Computer Assisted Radiology and Surgery, Vol. 6, No. 1, pp. 35-45, 2011.

M. Nakao, Y. Masuda, R. Haraguchi, K. Kurosaki, K. Kagisaki, I. Shiraishi, K. Nakazawa and K. Minato, "Interactive Cardiovascular Editor Using Echocardiographic Images", Int. Conf. Artificial Reality and Tele-existence, p154, Oct 2011.

Y. Oda, M. Nakao, K. Imanishi, K. Taura and K. Minato, "Direct Volume Manipulation for Navigating Liver Resection", Int. Conf. Artificial Reality and Tele-existence, p158, Oct 2011.

Yuki Hasegawa, Takao Shimayoshi, Akira Amano, Tetsuya Matsuda, "A Study on Prediction Methods for a Cardiovascular Strong-Coupling Simulation", In Proceedings of 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 137-140, Aug 2011.

[▲top]

2010

Takao Kato, Shinichiro Niizuma, Yasutaka Inuzuka, Tsuneaki Kawashima, Junji Okuda, Yodo Tamaki, Yoshitaka Iwanaga, Michiko Narazaki, Tetsuya Matsuda, Tomoyoshi Soga, Toru Kita, Takeshi Kimura and Tetsuo Shioi: Analysis of Metabolic Remodeling in Compensated Left Ventricular Hypertrophy and Heart Failure Circ Heart Fail 2010; vol3; pp420-430.

Michihiro Ogawa, Satoshi Nitahara, Hiroyuki Aoki, Shinzaburo Ito, Michiko Narazaki, Tetsuya Matsuda. Fluorinated Polymer Nanoparticles as a Novel 19F MRI Contrast Agent Prepared by Dendrimer-Initiated Living Radical Polymerizationa. Macromol. Chem. Phys. 211, 1369–1376, 2010.

Michihiro Ogawa, Satoshi Nitahara, Hiroyuki Aoki, Shinzaburo Ito, Michiko Narazaki, Tetsuya Matsuda. Synthesis and Evaluation of Water-Soluble Fluorinated Dendritic Block-Copolymer Nanoparticles as a 19F-MRI Contrast Agent. Macromol. Chem. Phys. 211, 1602–1609. 2010.

Hidenari Matsumoto, Tetsuya Matsuda, Kenichi Miyamoto, Toshihiko Shimada, Atsushi Hayashi, Mikiko Mikuri, Yuji Hiraoka: Late Gadolinium-Enhanced Cardiovascular MRI at End-Systole: Feasibility Study. AJR 195:1088–1094, 2010.

Yu Shimizu, Akira Amano, Tetsuya Matsuda: Oblique 3D MRI tags for the estimation of true 3D cardiac motion parameters. Int J Cardiovasc Imaging, 26:905–921, 2010.

2009

Kazuhito Tanabe et al, Monitoring of Biological One-Electron Reduction by 19F NMR Using Hypoxia Selective Activation of an 19F-Labeled Indolequinone Derivative. J Am Chem Soc, 131, 2009, pp15982-15983.

Yousuke Takaoka et al, Self-assembling nanoprobes that display off/on 19F nuclear magnetic resonance signals for protein detection and imaging. Nature Chemistry, 1, 2009, pp557-561.

Amano, Akira, Kubota, Yuuta, Shimayoshi, Takao, Matsuda, Tetsuya: EVALUATION OF CELL AND TISSUE HYPOXIC REACTION - MODEL STUDY, JOURNAL OF PHYSIOLOGICAL SCIENCES Volume: 59 Pages: 261-261 Supplement: Suppl. 1 Published: 2009 Proceedings of the XXXVI International Congress of Physiological Sciences (IUPS2009) July 28, 2009, Kyoto, JAPAN.

Shimayoshi, Takao, Amano, Akira, Matsuoka, Satoshi, Matsuda, Tetsuya: CYBOW MODELLER: USER-INTUITIVE TOOLS FOR CELL MODELLING JOURNAL OF PHYSIOLOGICAL SCIENCES Volume: 59 Pages: 262-262 Supplement: Suppl. 1 Published: 2009 Proceedings of the XXXVI International Congress of Physiological Sciences (IUPS2009) July 28, 2009, Kyoto, JAPAN

Shimayoshi T., Amano A., Matsuda T.: A method for analysis of simultaneous equations in cell models, Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: EMBC 2009, 2343-2346.

Amano A., Kubota Y., Shimayoshi T., Matsuda T: Evaluation of cardiac oxygen consumption under hypoxia with tissue model integrating microcirculation model and cell model. Proceedings of the 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society: Engineering the Future of Biomedicine, EMBC 2009, 3885-3888.

2008

Takao Shimayoshi, Akira Amano, Tetsuya Matsuda. A method for efficient execution of cell physiological simulation using graph theory. 6th Asia-Pacific Bioinformatics Conference. Jan 14-17, 2008. Kyoto Japan.

Akira Amano, Yasuhiro Takada, Jianyin Lu, Takao Shimayoshi, and Tetsuya Matsuda. An approximation model of myocardial crossbridge for weak coupling calculation of left ventricle model and circulation model. Proceedings of 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, pp. 957-960. Engineering in Medicine and Biology Society, August 2008.

2007

Eun Bo Shim, Akira Amano, Takayuki Takahata, Takao Shimayoshi and Akinori Noma: The cross-bridge dynamics during ventricular contraction predicted by coupling the cardiac cell model with the circulation model, Journal of Physiological Sciences, Vol. 57, No. 5, pp.275-285, 2007.

Akira AMANO, Kenichi KANDA, Tsukasa SHIBAYAMA, Yuu KAMEI, and Tetsuya MATSUDA: Model Generation Interface for Simulation of Left Ventricular Motion, Electronics and Communications in Japan, Part II, Vol 90, 12, pp.87-98, 2007.

Yutaka Nobuaki, Akira Amano, Takao Shimayoshi, Jianyin Lu, Eun B. Shim and Tetsuya Matsuda: Infant Circulation Model based on the Electrophysiological Cell Model, Proc. IEEE EMB Conference, pp.1010-1013, 2007.

Takao Shimayoshi, Akira Amano and Tetsuya Matsuda: A Generic Representation Format of Physiological Experimental Protocols for Computer Simulation using Ontology, Proc. IEEE EMB Conference, pp.382-385, 2007.

Jianyin Lu, Keichi Asakura, Akira Amano, Tetsuya Matsuda: Fast Drug Action Solving from Cardiac Action Potential by Model Fitting in A Sampled Parameter Space, Proc. IEEE EMB Conference, pp.131-134, 2007.

T Shimayoshi, K Hori, J Lu, A Amano, T Matsuda, A Noma: Cell Biological Function Simulation Platform DynaBioS, Trans. Electrical and Electronic Engineering C, Vol. 127, No. 11, pp.1928-1936, 2007.

Yutaka Nobuaki, Akira Amano, Takao Shimayoshi, Jianyin Lu, Eun B. Shim, and Tetsuya Matsuda: A Model for Simulation of Infant Cardiovascular Response to Orthostatic Stress, Proc. Functional Imaging and Modeling of the Heart, LNCS 4466, 190-199, 2007.

Y Takada, J Lu, T Shimayoshi, S Ishikawa, A Amano, H Kotera, T Matsuda: Stress Distribution in a Rotationally Symmetric and a Measurement Based Left Ventricular Shape Model, Trans. the Japanese Society for medical and Biological Engineering, 44(4), pp.613-620, 2006.

2006

S Mizuta, T Ono, T Matsuda: Contour Nest: A Two-dimensional Representation for Three-dimensional Isosurfaces, Proc. Volume Graphics, pp.67-70, Boston, July 2006.

S Mizuta, M Bansho, Du Leyu, T Matsuda, S Yamada, K Shiota: A Data Retrieval and Presentation System for a Morphological Database of Human Embryos Utilizing Three-Dimensional MR Microscopy Images, Trans. the Japanese Society for medical and Biological Engineering, 44(4), pp.665-673, 2006.

T Iida, S Mizuta, T Matsuda, S Yamada, K Shiota: Efficient Acquisition of Serially Sectioned Images from Human Embryo Specimens for Retrospective 3D Image Reconstruction, Trans. the Japanese Society for medical and Biological Engineering, 44(4), pp.650-657, 2006.

Y Kobayashi, S Mizuta, T Matsuda: Division of Isosurfaces Using a Region-based Contour Tree to Eliminate Self-Occlusion, Trans. the Japanese Society for medical and Biological Engineering, 44(4), pp.658-664, 2006.

S Mizuta, Du Leyu, T Matsuda, K Shiota: Automated Extraction of Whole-body Regions Using Region-based Contour Tree from Three-dimensional MRM Images of Human Embryo Specimens and Estimation of Body Length and Body Volume from a Large Image Data Set, Medical Imaging Technology, 24(4), pp.238-246, 2006.

Y Suwa, S Mizuta, T Matsuda: Interactive Region Extraction from Digital Images Using Region-based Contour Tree, The IEICE Transactions on Information and Systems, Vol.J89-D, No.9, pp.1999-2012, 2006.

Y Nobuaki, T Nishi, A Amano, Abe, T Matsuda: Comprehensive Multi-Domain Simulation System for Hemodynamics Simulation, Trans. the Japanese Society for medical and Biological Engineering, 44(1), pp.163-169, 2006.

J Lu, T Nishi, T Ashihara, N Shneider, A Amano, T Matsuda, H Kotera: Effect of Ventricular Activation Time to Tissue Contraction Force -Simulation Study-, Trans. the Japanese Society for medical and Biological Engineering, 44(1), pp.170-176, 2006.

T Oida, T Ohno, A Amano, Y Kang, A Okamoto, T Azuma, S Takizawa, S Tsutsumi, T Matsuda: Estimation of Viscoelastic Property from MR Elastography by Elastive Wave Fitting The IEICE Transactions on Information and Systems, Vol.J89-D, No.10, pp.2349-2360, 2006.

N Schneidera, T Shimayoshi, A Amano, T Matsuda: Mechanism of the Frank-Starling law - a simulation study with a novel cardiac muscle contraction model that includes titin and troponin I, Journal of Molecular and Cellular Cardiology, Vol. 41, Issue 3, pp.522-536, 2006.

T Oida, T Fujiwara, A Amano, Y Kang, S Tsutsumi, T Matsuda: Evaluation of Stationary and Transient Vibration in MR Elastography, Trans. the Japanese Society for medical and Biological Engineering, 44(3), pp.445-453, 2006.

T Shimayoshi, K Komurasaki, A Amano, T Iwashita, T Matsuda, M Kanazawa: A Method to Support Cell Physiological Modelling using Description Language and Ontology, IPSJ Transactions on Bioinformatics, Vol. 47, No. SIG 17(TBIO 1), pp.83-92, 2006.

T Shimayoshi, A Amano, T Matsuda: PSPML: Physiological Simulation Protocol Markup Language, Proc. Asia Pacific Bioinformatics Conference, 2006.

Y. Shimizu, X. Jin, A. Amano, T. Matsuda: Three Dimensional Tracking of Tag Intersections in Tagged MRI ISMRM, p.1015, 2006.

J Lu, T Nishi, T Ashihara, N Schneider, A Amano, T Matsuda, H Kotera: The Influence of Activation Time on Contraction Force of Myocardial Tissue: a Simulation Study, IEEE EMB Conference, pp.2900-2903, 2006.

Y Nobuaki, Y Kamei, J Lu, T Shimayoshi, S Ishikawa, A Amano, H Kotera, T Matsuda: Reproducing Nonlinear Force Velocity Relation of Myocardial Tissue by a Nonlinear Parallel Elastic Component, IEEE EMB Conference, pp.612-615, 2006.

Y Takada, A Amano, J Lu, T Shimayoshi, T Matsuda, H Kotera: Stress Distribution in a Rotationally Symmetric and a Measurement Based Left Ventricular Shape Model, IEEE EMB Conference, pp.624-627, 2006.

T Shimayoshi, K Komurasaki, A Amano, T Iwashita, M Kanazawa, T Matsuda: An Computer Support for Physiological Cell Modeling using an Ontology on Cell Physiology, IEEE EMB Conference, pp.4171-4174, 2006.

N Schneider, T Shimayoshi, A Amano, T Matsuda: A NOVEL CARDIAC MUSCLE CONTRACTION MODEL THAT INCLUDES TITIN ELUCIDATES A POTENTIAL FRANK-STARLING MECHANISM, International Muscle Energetics Conference(IMEC), 2006.

N Schneider, T Shimayoshi, A Amano, T Matsuda: Elucidation of a potential Frank-Starling mechanism through modeling and simulation, ICSB, 2006.

T Shimayoshi, A Amano, T Matsuda: DynaBioS.Cell: A New General Simulator for Cell Physiological Models to Facilitate Simulation of Experimental Protocols, ICSB, 2006.

2005

S Mizuta, T Matsuda: Description of Digital Images by Region-Based Contour Trees, Lecture Notes in Computer Science, pp.549-558, 2005.

Kenta Hori, Toshifumi Nishi, Jianyin Lu, Takao Shimayoshi, Takashi Ashihara, Akira Amano, Tetsuya Matsuda. Distributed Biological Simulation on DynaBioS. The IUPS Satellite Meeting for the Physiome Project, Mar, 2005.(2005/3/29, San Diego)

Jianyin Lu, Toshifumi Nishi, Natalie Schneider, Akira Amano, Tetsuya Matsuda, Hidetoshi Kotera, Akinori Noma, "Simulation of myocardial tissue contraction by coupling an electrophysiological cell model with a model of mechanical dynamics", 6th Asian-Pacific Conference on Medical and Biological Engineering, April 24, PA-3-08, 2005, Tsukuba(Japan)

Takao SHIMAYOSHI, Akira AMANO, Tetsuya MATSUDA: ``A Description Language for Cell Physiological Simulation,'' APCMBE, PA-3-09, 2005.

T. Oida, Y. Kang, T. Azuma, J. Okamoto, A. Amano, L. Axel, O. Takizawa, S. Tsutsumi, T. Matsuda The measurement of anisotropic elasticity in skeletal muscle using MR Elastography ISMRM, pp2020, 2005.

A Amano, K Kanda, T Shibayama, Y Kamei, T Matsuda: Model Generation Interface for Left Ventricular Wall Motion Simulation, The IEICE Transactions on Information and Systems, Vol.J88-D-II, No.5, pp.943-953, 2005.

Akira Amano, Toshifumi Nishi, Jianyin Lu, Natalie Schneider, Tetsuya Matsuda, Hidetoshi Kotera, Akinori Noma: ``Strong Coupling System for the LV Motion Simulation in a Distributed Simulation Environment,'' IEEE EMB Conference 2005, 9.4.5-9, 2005.

Yutaka NOBUAKI, Toshifumi NISHI, Akira AMANO, Yasuyuki ABE, Tetsuya MATSUDA: ``Simulation Algorithm for the Coupling of the Left Ventricular Mechanical Model with Arbitrary Circulation Model,'' IEEE EMB Conference 2005, 9.3.2-5, 2005.

3rd European Medical and Biological Engineering Conference, November 20-25th, 2005, Prague, Czech Republic. Full paper: Schneider, N.S., Shimayoshi, T., Amano, A., Matsuda, T., and Noma, A. (2005). Including titin in a simple muscle contraction model suitable for a myocardial cell model. EMBEC'05 Proceedings

2004

A Amano, T Matsuda: Model Generation Interface for Simulation of Left Ventricular Motion, IEEE EMB Conference, p3658-3661, 2004.

T. Shimayoshi, A. Amano, T Matsuda: A Software Environment for Simulators Suitable for Complex Biological Analysis, IEEE EMB Conference, p3047-3050, 2004.

2003

T. Shimogaki, S. Mizuta, T. Matsuda: "Comparing Force Information From a Real Object with that from a Virtual Object using a System for Measuring and Describing 3D Force Feedback", TVRSJ, Vol.8, No.2, pp.145-154 (2003)

N. Hashida, S. Mizuta, T. Matsuda: "A 3D Shape Recovery System from Photographic Data of A Human Embryo", Technical Report of IEICE, PRMU2003-38, pp.1-6 (2003)

M. Bansho, S. Mizuta, T. Matsuda, K. Shiota: "A Data Retrieval System for a Morphological Database of Human Embryos", Japan Soc. ME & BE, P23-6, pp.607 (2003)

T. Shibayama, T. Nishi, N. Sarai, S. Matsuoka, A. Amano, T. Matsuda, A. Noma: "Construction of Cardiac Cell Model with Parameter Optimization," Trans. JSMBE, Vol. 41, p.339 (2003)

N. Sarai, T. Shibayama, A. Amano, T. Matsuda, S. Matsuoka, A. Noma: "Implementation of Beta-Cell Model based on the General Cell Model Platform," Trans. JSMBE, Vol. 41, p.337 (2003)

N. Sarai, T. Shibayama, A. Amano, T. Matsuda, S. Matsuoka, A. Noma: "Electrophysiological Simulation Model of Cardiac Cell based on Object Oriented Model," Trans. JSMBE, Vol. 41, p.113 (2003)

M. Bansho, S. Mizuta, T. Matsuda, K. Shiota: "A Data Retrieval System Based on Bibliographic Information for a Morphological Database of Human Embryos", Technical Report of IEICE, MBE2003-6, pp.29-34 (2003)

Akira Amano, Nobuaki Sarai, Satoshi Matsuoka, Tetsuya Matsuda, Akinori Noma: "Simulation Environment for Multiscale and Multiphysics Biological Function Modeling," IASTED BioMED, pp.54-59 (2003)

T. Oida, T. Ohno, A. Amano, T. Matsuda, U. Kan, T. Azuma, S. Tsutsumi, J. Okamoto, O. Takizawa: "Estimation of the Viscoelastic properties from MR Elastography with Viscoelastic Wave Fitting," Technical Report of IEICE, MI2003-19, pp.43-48 (2003)

T. Shibayama, T. Nishi, N. Sarai, S. Matsuoka, A. Amano, T. Matsuda, A. Noma: "Biological Function Simulation Model Constructing Environment based on the Object Oriented Model," Technical Report of IEICE, MBE2003-05, pp.23-28, (2003)

S. Mizuta, T. Shimogaki, T. Oida, A. Amano, T. Matsuda: "Description and Evaluation of Force Information from Real Objects with MRE Measurement", Proc. 47th Ann. Conf. of ISCIE, pp.293-294 (2003)

T. Shibayama, T. Nishi, A. Amano, T. Matsuda, N. Sarai, S. Matsuoka, A. Noma: "Cellular Function Simulator Based on the Object Oriented Model," Proc. 47th Ann. Conf. of ISCIE, pp.535-536 (2003)

T. Masuda, S. Mizuta, T. Matsuda, T. Kuroda, H. Oyama: "Quantity Assessment for Force Feedback Effects in "Pulling" Action to Objects", Technical Report of IEICE, MBE2002-93, pp.33-36 (2003)

R. Nishihama, S. Mizuta, T. Matsuda: "Analysis of Haptic Properties of Hard Mass Surrounded by Soft Tissue using Finite Element Method", Technical Report of IEICE, MBE2002-94, pp.37-40 (2003)

2002

T. Shimogaki, S. Mizuta, T. Matsuda: "Construction of a System for Acquiring and Describing 3D Force Information from a Real Space", Technical Report of IEICE, MVE2002-80, pp.75-80 (2002)

T. Shimogaki, T. Sakai, Y. Kihara, S. Mizuta, T. Matsuda: "Registration of Sequential Cardiac Echo Images to MRI", Japan Soc. ME & BE, 124-01, pp.127 (2002)

T. Oida, T. Shibayama, S. Mizuta, T. Matsuda: "Development of an Interactive Volume Molding System", Japan Soc. ME & BE, 222-03, pp.230 (2002)

K. Kanda, S. Mizuta, T. Matsuda: "Volume Visualization Using Relative Distance among Voxels", Japan Soc. ME & BE, 222-04, pp.231 (2002)

R. Nishihama, K. Sugimoto, M. Komori, S. Mizuta, T. Matsuda: "Quantitative Evaluation of Haptic Sensitivity to the Response Delay on Shear Stress", Japan Soc. ME & BE, 224-05, pp.243 (2002)

K. Kanda, S. Mizuta, T. Matsuda: "Volume Visualization Using Relative Distance amoung Voxels", Proc. SPIE/MedicalImaging2002, Vol.4681, pp.641-648 (2002)

2001

T. Oida, T. Matsuda, S. Mizuta: "A Volume Molding System for Medical Images Using a Volume Rendering Board", Technical Report of IEICE, MI2001-48, pp.29-36 (2001)

K. Kanda, S. Mizuta, T. Matsuda: "Estraction of Organs Using Region-Growing Method with Knowledge of Opposed Domains and Its Application", Technical Report of IEICE, MI2001-50, pp.45-52 (2001)

S. Mizuta, K. Kanda, T. Matsuda: "Volume Visualization Using Gradient-Based Distance amoung Voxels', Proc. MICCAI2001, pp.1197-1198 (2001)

2000

H.Uematsu, M.Maeda, N.Sadato, T.Matsuda, Y.Ishimori, Y.Koshimoto,: "Vascular permeability: quantitative measurement with double-echo dynamic MR imaging--theory and clinical application", Radiology, Vol. 214, pp912-917 (2000)

S.Urayama, T.Matsuda, N.Sugimoto, S.Mizuta, N.Yamada, C.Uyama: "Detailed motion analysis of the left ventricular myocardium using an MR", Magn-Reson-Med, Vol.44, pp73-82 (2000)

H.Uematsu, T.Matsuda, T.Tsuchida, H.Inoue, K.Hayashi, Y.Yonekura, H.Itoh: "Semi-quantitative approach to estimating GFR by magnetic resonance imaging", MAGMA, Vol.10, pp171-176 (2000)

T.Matsuda, M.Suga: "MR elastography", Japanese Journal of Magnetic Resonance in Medicine, Vol.20, pp291-301 (2000)